Index

A

add_Circuit() (neuroarch.na.NeuroArch method) add_CircuitDiagram() (neuroarch.na.NeuroArch method) add_connecting_synapses() (neuroarch.query.QueryWrapper method) add_connecting_synapses1() (neuroarch.query.QueryWrapper method) add_DataSource() (neuroarch.na.NeuroArch method) add_ExecutableCircuit() (neuroarch.na.NeuroArch method) add_InferredSynapse() (neuroarch.na.NeuroArch method) add_LPU() (neuroarch.na.NeuroArch method) add_morphology() (neuroarch.na.NeuroArch method) add_Neuron() (neuroarch.na.NeuroArch method) add_neuron_arborization() (neuroarch.na.NeuroArch method) add_NeuronModel() (neuroarch.na.NeuroArch method) add_Neuropil() (neuroarch.na.NeuroArch method) add_neurotransmitter() (neuroarch.na.NeuroArch method) add_Port() (neuroarch.na.NeuroArch method)

add_Species() (neuroarch.na.NeuroArch method) add_Subregion() (neuroarch.na.NeuroArch method) add_Subsystem() (neuroarch.na.NeuroArch method) add_Synapse() (neuroarch.na.NeuroArch method) add_synapse_arborization() (neuroarch.na.NeuroArch method) add_SynapseModel() (neuroarch.na.NeuroArch method) add_Tract() (neuroarch.na.NeuroArch method) Aggregator (class in neuroarch.models) AlphaSynapse (class in neuroarch.models) ArborizationData (class in neuroarch.models) ArborizesIn (class in neuroarch.models) as_nx() (in module neuroarch.conv.nx) as_pandas() (in module neuroarch.conv.pd) available_DataSources() (neuroarch.na.NeuroArch method) AxonHillockModel (class in neuroarch.models) axons (neuroarch.models.ArborizationData attribute)

B

BioNode (class in neuroarch.models) BioSensor (class in neuroarch.models)

BufferPhoton (class in neuroarch.models) BufferVoltage (class in neuroarch.models)

C

Cartridge (class in neuroarch.models) CartridgeModel (class in neuroarch.models) Circuit (class in neuroarch.models) CircuitDiagram (class in neuroarch.models) CircuitModel (class in neuroarch.models) clear() (neuroarch.query.QueryWrapper method) Column (class in neuroarch.models)

ColumnModel (class in neuroarch.models) confidence (neuroarch.models.MorphologyData attribute) connect() (neuroarch.na.NeuroArch method) copy_models() (neuroarch.query.QueryWrapper method) create_efficiently() (in module neuroarch.models) create_model_from_circuit() (neuroarch.na.NeuroArch method) created_by (neuroarch.models.MetaData attribute) CRModel (class in neuroarch.models)

D

DataSource (class in neuroarch.models) DataSourceError DendriteModel (class in neuroarch.models) dendrites (neuroarch.models.ArborizationData attribute) description (neuroarch.models.DataSource attribute) DesignNode (class in neuroarch.models)

diagrams (neuroarch.models.CircuitDiagram attribute) diff_save() (neuroarch.query.QueryWrapper method) diff_save_as() (neuroarch.query.QueryWrapper method) direct_path_to() (neuroarch.query.QueryWrapper method) DuplicateNodeError DuplicateNodeWarning

E

edges (neuroarch.query.QueryWrapper property) edges_as_list (neuroarch.query.QueryWrapper property) edges_as_objs (neuroarch.query.QueryWrapper property) element_plural (neuroarch.models.Aggregator attribute) (neuroarch.models.AlphaSynapse attribute) (neuroarch.models.ArborizationData attribute) (neuroarch.models.AxonHillockModel attribute) (neuroarch.models.BioNode attribute) (neuroarch.models.BioSensor attribute) (neuroarch.models.BufferPhoton attribute) (neuroarch.models.BufferVoltage attribute) (neuroarch.models.Cartridge attribute) (neuroarch.models.CartridgeModel attribute) (neuroarch.models.Circuit attribute) (neuroarch.models.CircuitDiagram attribute) (neuroarch.models.CircuitModel attribute) (neuroarch.models.Column attribute) (neuroarch.models.ColumnModel attribute) (neuroarch.models.CRModel attribute) (neuroarch.models.DataSource attribute) (neuroarch.models.DendriteModel attribute) (neuroarch.models.DesignNode attribute) (neuroarch.models.ExecutableCircuit attribute) (neuroarch.models.GapJunction attribute) (neuroarch.models.GeneticData attribute) (neuroarch.models.Glomerulus attribute) (neuroarch.models.HodgkinHuxley attribute) (neuroarch.models.HodgkinHuxleyFull attribute) (neuroarch.models.InferredSynapse attribute) (neuroarch.models.Interface attribute) (neuroarch.models.LeakyIAF attribute) (neuroarch.models.LeakyIAFwithRefractoryPeriod attribute) (neuroarch.models.LPU attribute) (neuroarch.models.MembraneModel attribute) (neuroarch.models.MetaData attribute) (neuroarch.models.MorphologyData attribute) (neuroarch.models.MorrisLecar attribute) (neuroarch.models.NarxAdaptive attribute) (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronAndFragment attribute) (neuroarch.models.NeuronFragment attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.NeuronTerminal attribute) (neuroarch.models.Neuropil attribute) (neuroarch.models.NeurotransmitterData attribute) (neuroarch.models.Node attribute) (neuroarch.models.Ommatidium attribute) (neuroarch.models.OmmatidiumModel attribute) (neuroarch.models.Pattern attribute) (neuroarch.models.PhotoreceptorCell attribute) (neuroarch.models.PhotoreceptorModel attribute) (neuroarch.models.Port attribute) (neuroarch.models.PowerGPotGPot attribute) (neuroarch.models.QueryResult attribute) (neuroarch.models.SigmoidSynapse attribute) (neuroarch.models.Species attribute) (neuroarch.models.Subregion attribute) (neuroarch.models.Subsystem attribute) (neuroarch.models.Synapse attribute) (neuroarch.models.SynapseAMPA attribute) (neuroarch.models.SynapseGABA attribute) (neuroarch.models.SynapseModel attribute) (neuroarch.models.SynapseNMDA attribute) (neuroarch.models.Tract attribute) (neuroarch.models.Version attribute) element_type (neuroarch.models.Aggregator attribute) (neuroarch.models.AlphaSynapse attribute) (neuroarch.models.ArborizationData attribute) (neuroarch.models.AxonHillockModel attribute) (neuroarch.models.BioNode attribute) (neuroarch.models.BioSensor attribute) (neuroarch.models.BufferPhoton attribute) (neuroarch.models.BufferVoltage attribute) (neuroarch.models.Cartridge attribute) (neuroarch.models.CartridgeModel attribute) (neuroarch.models.Circuit attribute) (neuroarch.models.CircuitDiagram attribute) (neuroarch.models.CircuitModel attribute) (neuroarch.models.Column attribute) (neuroarch.models.ColumnModel attribute) (neuroarch.models.CRModel attribute) (neuroarch.models.DataSource attribute) (neuroarch.models.DendriteModel attribute) (neuroarch.models.DesignNode attribute) (neuroarch.models.ExecutableCircuit attribute) (neuroarch.models.GapJunction attribute) (neuroarch.models.GeneticData attribute) (neuroarch.models.Glomerulus attribute) (neuroarch.models.HodgkinHuxley attribute) (neuroarch.models.HodgkinHuxleyFull attribute) (neuroarch.models.InferredSynapse attribute) (neuroarch.models.Interface attribute) (neuroarch.models.LeakyIAF attribute) (neuroarch.models.LeakyIAFwithRefractoryPeriod attribute) (neuroarch.models.LPU attribute) (neuroarch.models.MembraneModel attribute) (neuroarch.models.MetaData attribute) (neuroarch.models.MorphologyData attribute) (neuroarch.models.MorrisLecar attribute) (neuroarch.models.NarxAdaptive attribute) (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronAndFragment attribute) (neuroarch.models.NeuronFragment attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.NeuronTerminal attribute) (neuroarch.models.Neuropil attribute) (neuroarch.models.NeurotransmitterData attribute) (neuroarch.models.Node attribute) (neuroarch.models.Ommatidium attribute) (neuroarch.models.OmmatidiumModel attribute) (neuroarch.models.Pattern attribute) (neuroarch.models.PhotoreceptorCell attribute) (neuroarch.models.PhotoreceptorModel attribute) (neuroarch.models.Port attribute) (neuroarch.models.PowerGPotGPot attribute) (neuroarch.models.QueryResult attribute) (neuroarch.models.SigmoidSynapse attribute) (neuroarch.models.Species attribute) (neuroarch.models.Subregion attribute) (neuroarch.models.Subsystem attribute) (neuroarch.models.Synapse attribute) (neuroarch.models.SynapseAMPA attribute) (neuroarch.models.SynapseGABA attribute) (neuroarch.models.SynapseModel attribute) (neuroarch.models.SynapseNMDA attribute) (neuroarch.models.Tract attribute) (neuroarch.models.Version attribute)

empty_query() (neuroarch.query.QueryWrapper class method) ExecutableCircuit (class in neuroarch.models) execute() (neuroarch.query.QueryWrapper method) execute_edges() (neuroarch.query.QueryWrapper method) executed (neuroarch.query.QueryWrapper property) exists() (neuroarch.na.NeuroArch method) export_graph() (neuroarch.query.QueryWrapper method) export_tags() (neuroarch.na.NeuroArch method)

F

faces (neuroarch.models.MorphologyData attribute) FFBOdata (neuroarch.models.QueryResult attribute) find() (neuroarch.na.NeuroArch method) find_matching_ports_from_selector() (neuroarch.query.QueryWrapper method)

find_objs() (neuroarch.na.NeuroArch method) from_elements() (neuroarch.query.QueryWrapper class method) from_objs() (neuroarch.query.QueryWrapper class method) from_rids() (neuroarch.query.QueryWrapper class method) from_tag() (neuroarch.query.QueryWrapper class method)

G

GapJunction (class in neuroarch.models) gen_traversal_in() (neuroarch.query.QueryWrapper method) gen_traversal_out() (neuroarch.query.QueryWrapper method) GeneticData (class in neuroarch.models) get() (neuroarch.na.NeuroArch method) get_as() (neuroarch.query.QueryWrapper method) get_connected_ports() (neuroarch.query.QueryWrapper method) get_connecting_synapsemodels() (neuroarch.query.QueryWrapper method) get_connecting_synapses() (neuroarch.query.QueryWrapper method)

get_data() (in module neuroarch.na) (neuroarch.query.QueryWrapper method) get_data_qw() (neuroarch.query.QueryWrapper method) get_data_rids() (neuroarch.query.QueryWrapper method) get_nodes() (neuroarch.query.QueryWrapper method) get_props() (neuroarch.models.NeuroarchNodeMixin method) Glomerulus (class in neuroarch.models) gremlin() (neuroarch.models.NeuroarchNodeMixin method) gremlin_raw() (neuroarch.models.NeuroarchNodeMixin method)

H

has() (neuroarch.query.QueryWrapper method) HasData (class in neuroarch.models)

HasQueryResults (class in neuroarch.models) HodgkinHuxley (class in neuroarch.models) HodgkinHuxleyFull (class in neuroarch.models)

I

identifier (neuroarch.models.MorphologyData attribute) import_graph() (neuroarch.query.QueryWrapper method) import_tags() (neuroarch.na.NeuroArch method) incoming_synapses() (in module neuroarch.na)

InferredSynapse (class in neuroarch.models) info (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronFragment attribute) Interface (class in neuroarch.models)

K

keywords (neuroarch.models.QueryResult attribute)

kind (neuroarch.models.ArborizesIn attribute)

L

label (neuroarch.models.ArborizesIn attribute) (neuroarch.models.HasData attribute) (neuroarch.models.HasQueryResults attribute) (neuroarch.models.Models attribute) (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronFragment attribute) (neuroarch.models.Owns attribute) (neuroarch.models.QueryOwns attribute) (neuroarch.models.Relationship attribute) (neuroarch.models.Requires attribute) (neuroarch.models.SendsTo attribute) LeakyIAF (class in neuroarch.models) LeakyIAFwithRefractoryPeriod (class in neuroarch.models) link() (neuroarch.na.NeuroArch method) link_post (neuroarch.models.AlphaSynapse attribute) (neuroarch.models.PowerGPotGPot attribute) (neuroarch.models.SigmoidSynapse attribute) (neuroarch.models.SynapseAMPA attribute) (neuroarch.models.SynapseGABA attribute) (neuroarch.models.SynapseNMDA attribute)

link_pre (neuroarch.models.AlphaSynapse attribute) (neuroarch.models.PowerGPotGPot attribute) (neuroarch.models.SigmoidSynapse attribute) (neuroarch.models.SynapseAMPA attribute) (neuroarch.models.SynapseGABA attribute) (neuroarch.models.SynapseNMDA attribute) link_with_batch() (neuroarch.na.NeuroArch method) load_swc() (in module neuroarch.na) locality (neuroarch.models.Neuron attribute) LPU (class in neuroarch.models)

M

maintainer (neuroarch.models.MetaData attribute) MembraneModel (class in neuroarch.models) MetaData (class in neuroarch.models) Models (class in neuroarch.models) module neuroarch.conv.nx neuroarch.conv.pd neuroarch.models

morph_type (neuroarch.models.MorphologyData attribute) MorphologyData (class in neuroarch.models) MorrisLecar (class in neuroarch.models) multi_traverse_owned_by_toplevel() (neuroarch.query.QueryWrapper class method)

N

N (neuroarch.models.InferredSynapse attribute) (neuroarch.models.Synapse attribute) N_axons (neuroarch.models.ArborizesIn attribute) N_dendrites (neuroarch.models.ArborizesIn attribute) na_lpu_to_nk() (in module neuroarch.nk) na_pat_to_nk() (in module neuroarch.nk) name (neuroarch.models.ArborizationData attribute) (neuroarch.models.BioSensor attribute) (neuroarch.models.Cartridge attribute) (neuroarch.models.Circuit attribute) (neuroarch.models.CircuitDiagram attribute) (neuroarch.models.CircuitModel attribute) (neuroarch.models.Column attribute) (neuroarch.models.DataSource attribute) (neuroarch.models.DendriteModel attribute) (neuroarch.models.ExecutableCircuit attribute) (neuroarch.models.GapJunction attribute) (neuroarch.models.GeneticData attribute) (neuroarch.models.Glomerulus attribute) (neuroarch.models.InferredSynapse attribute) (neuroarch.models.Interface attribute) (neuroarch.models.LPU attribute) (neuroarch.models.MorphologyData attribute) (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronFragment attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.NeuronTerminal attribute) (neuroarch.models.Neuropil attribute) (neuroarch.models.NeurotransmitterData attribute) (neuroarch.models.Ommatidium attribute) (neuroarch.models.Pattern attribute) (neuroarch.models.Species attribute) (neuroarch.models.Subregion attribute) (neuroarch.models.Subsystem attribute) (neuroarch.models.Synapse attribute) (neuroarch.models.SynapseModel attribute) (neuroarch.models.Tract attribute)

NarxAdaptive (class in neuroarch.models) NeuroArch (class in neuroarch.na) neuroarch.conv.nx module neuroarch.conv.pd module neuroarch.models module NeuroarchNodeMixin (class in neuroarch.models) Neuron (class in neuroarch.models) NeuronAndFragment (class in neuroarch.models) NeuronFragment (class in neuroarch.models) NeuronModel (class in neuroarch.models) NeuronTerminal (class in neuroarch.models) Neuropil (class in neuroarch.models) neuropils (neuroarch.models.Tract attribute) NeurotransmitterData (class in neuroarch.models) NHP (neuroarch.models.Synapse attribute) Node (class in neuroarch.models) node_objs (neuroarch.query.QueryWrapper property) node_rids (neuroarch.query.QueryWrapper property) NodeAlreadyExistError NodeAlreadyExistWarning nodes (neuroarch.query.QueryWrapper property) nodes_as_list (neuroarch.query.QueryWrapper property) nodes_as_objs (neuroarch.query.QueryWrapper property) NotWriteableError nx_to_orient() (in module neuroarch.conv.nx)

O

Ommatidium (class in neuroarch.models) OmmatidiumModel (class in neuroarch.models) orient_to_nx() (in module neuroarch.conv.nx) orient_to_pandas() (in module neuroarch.conv.pd) outgoing_synapses() (in module neuroarch.na)

owned_by() (neuroarch.models.NeuroarchNodeMixin method) (neuroarch.query.QueryWrapper method) Owns (class in neuroarch.models) owns() (neuroarch.models.NeuroarchNodeMixin method) (neuroarch.query.QueryWrapper method)

P

pandas_to_orient() (in module neuroarch.conv.pd) params (neuroarch.models.DendriteModel attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.SynapseModel attribute) parent (neuroarch.models.MorphologyData attribute) path_to() (neuroarch.query.QueryWrapper method) path_to2() (neuroarch.query.QueryWrapper method) path_to_neurons() (neuroarch.query.QueryWrapper method) Pattern (class in neuroarch.models) PhotoreceptorCell (class in neuroarch.models)

PhotoreceptorModel (class in neuroarch.models) Port (class in neuroarch.models) port_io (neuroarch.models.Port attribute) port_type (neuroarch.models.Port attribute) post_synaptic_neurons() (neuroarch.query.QueryWrapper method) post_synaptic_neurons_with_synapse_count() (neuroarch.query.QueryWrapper method) PowerGPotGPot (class in neuroarch.models) pre_synaptic_neurons() (neuroarch.query.QueryWrapper method) pre_synaptic_neurons_with_synapse_count() (neuroarch.query.QueryWrapper method) props (neuroarch.models.NeuroarchNodeMixin property)

Q

query() (neuroarch.query.QueryWrapper method) query_celltype() (neuroarch.na.NeuroArch method) query_neuron() (neuroarch.na.NeuroArch method) query_neuropil() (neuroarch.na.NeuroArch method) query_string (neuroarch.query.QueryWrapper property)

query_subregion() (neuroarch.na.NeuroArch method) query_synapses() (neuroarch.na.NeuroArch method) QueryOwns (class in neuroarch.models) QueryResult (class in neuroarch.models) QueryWrapper (class in neuroarch.query)

R

r (neuroarch.models.MorphologyData attribute) reconnect() (neuroarch.na.NeuroArch method) RecordNotFoundError referenceId (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronFragment attribute) registry_name (neuroarch.models.Aggregator attribute) (neuroarch.models.AlphaSynapse attribute) (neuroarch.models.ArborizationData attribute) (neuroarch.models.ArborizesIn attribute) (neuroarch.models.AxonHillockModel attribute) (neuroarch.models.BioNode attribute) (neuroarch.models.BioSensor attribute) (neuroarch.models.BufferPhoton attribute) (neuroarch.models.BufferVoltage attribute) (neuroarch.models.Cartridge attribute) (neuroarch.models.CartridgeModel attribute) (neuroarch.models.Circuit attribute) (neuroarch.models.CircuitDiagram attribute) (neuroarch.models.CircuitModel attribute) (neuroarch.models.Column attribute) (neuroarch.models.ColumnModel attribute) (neuroarch.models.CRModel attribute) (neuroarch.models.DataSource attribute) (neuroarch.models.DendriteModel attribute) (neuroarch.models.DesignNode attribute) (neuroarch.models.ExecutableCircuit attribute) (neuroarch.models.GapJunction attribute) (neuroarch.models.GeneticData attribute) (neuroarch.models.Glomerulus attribute) (neuroarch.models.HasData attribute) (neuroarch.models.HasQueryResults attribute) (neuroarch.models.HodgkinHuxley attribute) (neuroarch.models.HodgkinHuxleyFull attribute) (neuroarch.models.InferredSynapse attribute) (neuroarch.models.Interface attribute) (neuroarch.models.LeakyIAF attribute) (neuroarch.models.LeakyIAFwithRefractoryPeriod attribute) (neuroarch.models.LPU attribute) (neuroarch.models.MembraneModel attribute) (neuroarch.models.MetaData attribute) (neuroarch.models.Models attribute) (neuroarch.models.MorphologyData attribute) (neuroarch.models.MorrisLecar attribute) (neuroarch.models.NarxAdaptive attribute) (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronAndFragment attribute) (neuroarch.models.NeuronFragment attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.NeuronTerminal attribute) (neuroarch.models.Neuropil attribute) (neuroarch.models.NeurotransmitterData attribute) (neuroarch.models.Node attribute) (neuroarch.models.Ommatidium attribute) (neuroarch.models.OmmatidiumModel attribute) (neuroarch.models.Owns attribute) (neuroarch.models.Pattern attribute) (neuroarch.models.PhotoreceptorCell attribute) (neuroarch.models.PhotoreceptorModel attribute) (neuroarch.models.Port attribute) (neuroarch.models.PowerGPotGPot attribute) (neuroarch.models.QueryOwns attribute) (neuroarch.models.QueryResult attribute) (neuroarch.models.Relationship attribute) (neuroarch.models.Requires attribute) (neuroarch.models.SendsTo attribute) (neuroarch.models.SigmoidSynapse attribute) (neuroarch.models.Species attribute) (neuroarch.models.Subregion attribute) (neuroarch.models.Subsystem attribute) (neuroarch.models.Synapse attribute) (neuroarch.models.SynapseAMPA attribute) (neuroarch.models.SynapseGABA attribute) (neuroarch.models.SynapseModel attribute) (neuroarch.models.SynapseNMDA attribute) (neuroarch.models.Tract attribute) (neuroarch.models.Version attribute)

registry_plural (neuroarch.models.Aggregator attribute) (neuroarch.models.AlphaSynapse attribute) (neuroarch.models.ArborizationData attribute) (neuroarch.models.ArborizesIn attribute) (neuroarch.models.AxonHillockModel attribute) (neuroarch.models.BioNode attribute) (neuroarch.models.BioSensor attribute) (neuroarch.models.BufferPhoton attribute) (neuroarch.models.BufferVoltage attribute) (neuroarch.models.Cartridge attribute) (neuroarch.models.CartridgeModel attribute) (neuroarch.models.Circuit attribute) (neuroarch.models.CircuitDiagram attribute) (neuroarch.models.CircuitModel attribute) (neuroarch.models.Column attribute) (neuroarch.models.ColumnModel attribute) (neuroarch.models.CRModel attribute) (neuroarch.models.DataSource attribute) (neuroarch.models.DendriteModel attribute) (neuroarch.models.DesignNode attribute) (neuroarch.models.ExecutableCircuit attribute) (neuroarch.models.GapJunction attribute) (neuroarch.models.GeneticData attribute) (neuroarch.models.Glomerulus attribute) (neuroarch.models.HasData attribute) (neuroarch.models.HasQueryResults attribute) (neuroarch.models.HodgkinHuxley attribute) (neuroarch.models.HodgkinHuxleyFull attribute) (neuroarch.models.InferredSynapse attribute) (neuroarch.models.Interface attribute) (neuroarch.models.LeakyIAF attribute) (neuroarch.models.LeakyIAFwithRefractoryPeriod attribute) (neuroarch.models.LPU attribute) (neuroarch.models.MembraneModel attribute) (neuroarch.models.MetaData attribute) (neuroarch.models.Models attribute) (neuroarch.models.MorphologyData attribute) (neuroarch.models.MorrisLecar attribute) (neuroarch.models.NarxAdaptive attribute) (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronAndFragment attribute) (neuroarch.models.NeuronFragment attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.NeuronTerminal attribute) (neuroarch.models.Neuropil attribute) (neuroarch.models.NeurotransmitterData attribute) (neuroarch.models.Node attribute) (neuroarch.models.Ommatidium attribute) (neuroarch.models.OmmatidiumModel attribute) (neuroarch.models.Owns attribute) (neuroarch.models.Pattern attribute) (neuroarch.models.PhotoreceptorCell attribute) (neuroarch.models.PhotoreceptorModel attribute) (neuroarch.models.Port attribute) (neuroarch.models.PowerGPotGPot attribute) (neuroarch.models.QueryOwns attribute) (neuroarch.models.QueryResult attribute) (neuroarch.models.Relationship attribute) (neuroarch.models.Requires attribute) (neuroarch.models.SendsTo attribute) (neuroarch.models.SigmoidSynapse attribute) (neuroarch.models.Species attribute) (neuroarch.models.Subregion attribute) (neuroarch.models.Subsystem attribute) (neuroarch.models.Synapse attribute) (neuroarch.models.SynapseAMPA attribute) (neuroarch.models.SynapseGABA attribute) (neuroarch.models.SynapseModel attribute) (neuroarch.models.SynapseNMDA attribute) (neuroarch.models.Tract attribute) (neuroarch.models.Version attribute) Relationship (class in neuroarch.models) remove_Neurons() (neuroarch.na.NeuroArch method) remove_Synapses() (neuroarch.na.NeuroArch method) remove_Synapses_between() (neuroarch.na.NeuroArch method) remove_tag() (neuroarch.na.NeuroArch method) Requires (class in neuroarch.models)

S

sample (neuroarch.models.MorphologyData attribute) selector (neuroarch.models.Port attribute) SendsTo (class in neuroarch.models) set() (neuroarch.na.NeuroArch method) sex (neuroarch.models.Species attribute) SigmoidSynapse (class in neuroarch.models) Species (class in neuroarch.models) spiking (neuroarch.models.HodgkinHuxley attribute) (neuroarch.models.HodgkinHuxleyFull attribute) (neuroarch.models.LeakyIAF attribute) (neuroarch.models.LeakyIAFwithRefractoryPeriod attribute) (neuroarch.models.MorrisLecar attribute) (neuroarch.models.PhotoreceptorModel attribute) sql_query() (neuroarch.na.NeuroArch method) stage (neuroarch.models.Species attribute) states (neuroarch.models.DendriteModel attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.SynapseModel attribute)

submodules (neuroarch.models.CircuitDiagram attribute) Subregion (class in neuroarch.models) Subsystem (class in neuroarch.models) Synapse (class in neuroarch.models) SynapseAMPA (class in neuroarch.models) SynapseGABA (class in neuroarch.models) SynapseModel (class in neuroarch.models) SynapseNMDA (class in neuroarch.models) synapses (neuroarch.models.ArborizationData attribute) synapses_to() (neuroarch.query.QueryWrapper method) synonyms (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronTerminal attribute) (neuroarch.models.Neuropil attribute) (neuroarch.models.Species attribute) (neuroarch.models.Subregion attribute) (neuroarch.models.Subsystem attribute)

T

tag (neuroarch.models.QueryResult attribute) tag_clean_up() (neuroarch.query.QueryWrapper method) tag_query_result_node() (neuroarch.query.QueryWrapper method) Tract (class in neuroarch.models) Transmitters (neuroarch.models.NeurotransmitterData attribute)

traverse_owned_by() (neuroarch.models.NeuroarchNodeMixin method) (neuroarch.query.QueryWrapper method) traverse_owned_by_get_toplevel() (neuroarch.query.QueryWrapper method) traverse_owns() (neuroarch.models.NeuroarchNodeMixin method) (neuroarch.query.QueryWrapper method) type (neuroarch.models.ArborizationData attribute)

U

uname (neuroarch.models.ArborizationData attribute) (neuroarch.models.DendriteModel attribute) (neuroarch.models.InferredSynapse attribute) (neuroarch.models.MorphologyData attribute) (neuroarch.models.Neuron attribute) (neuroarch.models.NeuronFragment attribute) (neuroarch.models.NeuronModel attribute) (neuroarch.models.Synapse attribute) (neuroarch.models.SynapseModel attribute)

update() (neuroarch.models.NeuroarchNodeMixin method) update_Neuron() (neuroarch.na.NeuroArch method) update_Synapse() (neuroarch.na.NeuroArch method) url (neuroarch.models.DataSource attribute)

V

variable (neuroarch.models.SendsTo attribute) Version (class in neuroarch.models) version (neuroarch.models.CircuitDiagram attribute) (neuroarch.models.DataSource attribute) (neuroarch.models.ExecutableCircuit attribute) (neuroarch.models.LPU attribute) (neuroarch.models.MetaData attribute) (neuroarch.models.Models attribute) (neuroarch.models.Neuropil attribute) (neuroarch.models.Pattern attribute) (neuroarch.models.Subsystem attribute) (neuroarch.models.Tract attribute) (neuroarch.models.Version attribute)

vertices (neuroarch.models.MorphologyData attribute)

X

x (neuroarch.models.MorphologyData attribute)

Y

y (neuroarch.models.MorphologyData attribute)

Z

z (neuroarch.models.MorphologyData attribute)